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Poslední úprava: RNDr. Michaela Schierová, Ph.D. (01.03.2019)
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Poslední úprava: RNDr. Irena Lichá, CSc. (18.03.2019)
Due to the rapid development of microbiome analysis methods and tools, recommended literature also changes rapidly. The students are thus given compulsory reading during the lectures. In this way, the lecturers can better follow the development in the field.
Selection from recommended literature:
Escobar-Zepeda, A., Vera-Ponce de León, A., Sanchez-Flores, A., 2015. The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics. Frontiers in Genetics 6,348.
Marchesi, J.R., Ravel, J., 2015. The vocabulary of microbiome research: a proposal. Microbiome 3, 31.
Nilsson, R.H., Anslan, S., Bahram, M., Wurzbacher, C., Baldrian, P., Tedersoo, L., 2019. Mycobiome diversity: high-throughput sequencing and identification of fungi. Nature Reviews Microbiology 17, 95-109.
Větrovský, T., Baldrian, P., Morais, D., 2018. SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses. Bioinformatics 34, 2292-2294.
Žifčáková, L., Větrovský, T., Lombard, V., Henrissat, B., Howe, A., Baldrian, P., 2017. Feed in summer, rest in winter: microbial carbon utilization in forest topsoil. Microbiome 5, 122. |
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Poslední úprava: RNDr. Irena Lichá, CSc. (08.08.2019)
studenti budou hodnoceni na základě písemného testu. |
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Poslední úprava: RNDr. Michaela Schierová, Ph.D. (01.03.2019)
1. Metagenome-Wide Association Studies 2. Sequencing technology fundamentals 3. Experimental design 4. Sequencing data treatment and genome assembly 5. Taxonomic profile based on amplicon data: ‘Who is there?’ 6. Genomics, Metagenomics and Shotgun data handling 7. Analysis of RNA and Metatranscriptomics 8. Technical demonstration of the most used methods for high-throughput sequencing data manipulation
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