|
|
|
||
Last update: RNDr. Martin Převorovský, Ph.D. (07.02.2022)
IMPORTANT: Bioinformatics students - do not take this course. Instead, take the "Genomics - Approaches and Algorithms (MB151P130)" course, which is mandatory for your MSc program. The course is taught with the support of the project ESF pro VŠ II na UK, Reg. num.: CZ.02.2.69/0.0/0.0/18_056/0013322 |
|
||
Last update: RNDr. Martin Převorovský, Ph.D. (29.05.2020)
Course materials from lectures and practical sessions (including recommended reading items) are available via Moodle. |
|
||
Last update: RNDr. Martin Převorovský, Ph.D. (29.05.2020)
credit (zápočet) - active participation at practical sessions exam - ability to apply information from lectures and practicals will be determined using a written test and a practical assignment |
|
||
Last update: RNDr. Martin Převorovský, Ph.D. (29.05.2020)
Topics covered: - microarrays, next generation sequencing - how they work, technologies, applications, advantages, limitations - analyses of genome, transcriptome (RNA-seq), translatome..., single-cell analyses - epigenomics - chromatin modifications, transcription factor binding sites (ChIP-seq) - analysis of 3D nuclear architecture - chromosome conformation capture methods (HiC) - metagenomics - analysis of environmental samples, composition of microbial communities - genetic interactions - mutant libraries, synthetic genetic array, siRNA screens, mapping the functional architecture of a cell - chemical genetics - identification of novel targets for therapy - tools for genomic data processing and analysis - Galaxy framework, genome browsers... - visualizing genomic data - integrating data from various methods - databases for "omics" data
Practical sessions will be based on online tools and resources (eg. Galaxy). No programming skill are needed. |
|
||
Last update: RNDr. Martin Převorovský, Ph.D. (29.05.2020)
General knowledge of cell and molecular biology, genetics, and basic knowledge of statistics are required for understanding the course materials. You must be able to log into CAS (https://ldap1.cuni.cz/) for the practical sessions. No programming skills are required. |