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Course, academic year 2025/2026
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Evolutionary genetics - MB170P102
Title: Evolutionary genetics
Czech title: Evoluční genetika
Guaranteed by: Department of Zoology (31-170)
Faculty: Faculty of Science
Actual: from 2024
Semester: winter
E-Credits: 5
Examination process: winter s.:combined
Hours per week, examination: winter s.:2/1, C+Ex [HT]
Capacity: unlimited
Min. number of students: unlimited
4EU+: no
Virtual mobility / capacity: no
State of the course: taught
Language: English
Note: enabled for web enrollment
priority enrollment if the course is part of the study plan
Guarantor: RNDr. Radka Reifová, Ph.D.
Teacher(s): RNDr. Radka Reifová, Ph.D.
Incompatibility : MB170P24
Annotation -
Evolutionary genetics is a field that combines knowledge from classical genetics, molecular biology, and evolutionary biology. The discipline emerged in the first half of the 20th century through the synthesis of Darwin’s theory of evolution and Mendel’s theory of inheritance, known as the Modern Synthesis. It explains evolution from the perspective of the mechanisms that create and shape genetic variability within populations and transform it into differences between species.
The foundations of evolutionary genetics were laid by the theoretical work of R. A. Fisher, S. Wright, and J. B. S. Haldane, who described the effects of genetic drift, selection, and gene flow on the genetic variability of populations. After the discovery of DNA structure, evolutionary genetics was enriched by the neutral theory of evolution and coalescent theory.

Today, the field is gaining new dimensions thanks to the influx of vast amounts of molecular data, including whole-genome sequences from various organisms. The existence of theoretical models of evolution and the availability of real molecular data now provide us with a unique opportunity to explore the specific mechanisms responsible for the emergence of adaptive traits and the biological diversity we observe around us.

The lecture content includes:
(1) a current view on the principles of inheritance,
(2) an introduction to genome structure and evolution as well as methods of functional genomics,
(3) an explanation of the processes involved in the origin and shaping of genetic polymorphism within and between species,
(4) a description of processed leading to the emergence of new species
(5) an explanation of key population genetic and molecular evolution theories, including their applications in empirical data analysis.

As evolutionary genetics is a rapidly developing discipline, students are encouraged to keep up with current advances in the field through short student presentations on the selected topic.

Last update: Reifová Radka, RNDr., Ph.D. (18.10.2025)
Literature -

Presentations from the lectures, recommended articles and selected books on population genetics, molecular evolution and speciation:

E.g.,
Rasmus Nielsen and Montgomery Slatkin (2013). An Introduction to Population Genetics  
Catherine L Peichel, Daniel I Bolnick, Åke Brännström, Ulf Dieckmann, Rebecca J Safran (2025). Speciation
Philip W. Hedrick (2005). Genetics of Populations 
Dan Graur, Wen-Hsiung Li (2000). Fundamentals of Molecular Evolution. 
Evolutionary Genetics: Concepts and Case Studies. C.W. Fox & J.B. Wolf (Eds.). 

Last update: Reifová Radka, RNDr., Ph.D. (18.10.2025)
Requirements to the exam -

The exam is oral. Additional credits are awarded for giving a presentation on a selected topic. In addition to attending lectures, it is recommended that you learn from presentations given during the course and the articles discussed. Further information can be found in the recommended literature.

Last update: Reifová Radka, RNDr., Ph.D. (18.10.2025)
Syllabus

1. Genes and genomes: Composition of genomes, coding and non-coding sequences, repetitive content, transposons and their role in evolution of organisms, polyploidization, programmed DNA elimination

2. Mechanisms of inheritance: Mendelian and non-mendelian inheritance, recombination and its evolutionary importance, gene conversion, meiotic drive, horizontal gene transfer, epigenetic inheritance

3. Introduction to population genetics: Hardy-Weinberg equilibrium, assortative mating, inbreeding, population structure, genetic drift, mutations, migration  

4. Neutral theory of molecular evolution: Substitution rates, nucleotide substitution models, molecular clocks.

5. Selection: Positive, negative, balancing selections and methods of their detection. Selective sweeps, background selection, genetic basis of adaptations.

6. Functional genetics: Genetic mapping using experimental crosses, association mapping, admixture mapping, linkage disequilibrium, methods of gene editing.

7. Speciation and hybridization: Species concepts, speciation with and without gene flow, methods to measure levels of gene flow, importance of gene flow in evolution, origin and evolution of intrinsic postzygotic isolation from genic, chromosomal and genomic perspectives

8. Gene trees and species trees: Theory of coalescence, gene genealogies, lineage sorting, ancestral polymorphism, how to construct phylogenetic trees

Last update: Reifová Radka, RNDr., Ph.D. (18.10.2025)
Learning outcomes

After completing the course, students will be able to:

  1. Explain the molecular and genetic mechanisms that generate and maintain genetic variation within and between populations.

  2. Describe the structure, function, and evolution of genomes, including the roles of transposons, polyploidization, and non-coding DNA.

  3. Apply main population genetic principles (e.g. Hardy–Weinberg equilibrium, genetic drift, selection, migration, mutation) when interpreting patterns of genetic diversity.

  4. Discuss the neutral and selective processes shaping molecular evolution and interpret molecular data in light of these theories.

  5. Evaluate mechanisms of speciation and hybridization, and distinguish between different species concepts and models of gene flow.

  6. Construct and interpret gene genealogies and species trees using coalescent theory and phylogenetic approaches.

  7. Describe  methods of functional and comparative genomics to identify adaptive genetic changes.

  8. Critically assess current research and theoretical models in evolutionary genetics, integrating empirical evidence from molecular and genomic data.

Last update: Gáliková Kristýna, Mgr. et Mgr., DiS. (21.10.2025)
 
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