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Last update: Mgr. Michal Štefánek (02.05.2022)
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Last update: Mgr. Michal Štefánek (02.05.2022)
Wiley, E.O., Siegel-Causey, D., Brooks, D.R. & Funk, V.A., 1991: The compleat cladist. A primer of phylogenetic procedures. The University of Kansas Museum of Natural History. Special Publication no. 19. http://www.amnh.org/learn/pd/fish_2/pdf/compleat_cladist.pdf
Forey, P.L., Humphries, C.J., Kitching, I.J., Scotland, R.W., Siebert, D.J. & Williams, D., 1992: Cladistics. A practical course in systematics. Clarendon Press, Oxford.
Kitching, I.J., Forey, P.L., Humphries, C.J. & Williams, D.M., 1998: Cladistics. The theory and practice of parsimony analysis. Ed. 2. Oxford University Press, Oxford
Hall B.G. (2001): Phylogenetic trees made easy.
Felsenstein J. (2004): Inferring phylogenies.
Mount D.W. (2004): Bioinformatics. Sequence and genome analysis.
Salemi M. & Vandamme A.-M. (2003): The phylogenetic handbook. A practical approach to DNA and protein phylogeny. |
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Last update: Mgr. Michal Štefánek (02.05.2022)
written test and oral examination |
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Last update: Mgr. Michal Štefánek (02.05.2022)
Cladistic approach (parsimony analysis): Monophyletic, paraphyletic and polyphyletic groups; sister groups and outgroup comparison; polarisation of characters; optimisation of characters; cladistic rules; character coding. Types of parsimony; Hennig's method; Wagner algorithm. Comparison of trees; consistency and retention indices; tree length. Methods of building trees; exhaustive search; heuristic analysis and other methods; consensus trees; bootstrap; conventions. Techniques of parsimony analysis for large data sets.
Alternative methods of evolutionary reconstruction: Methods based on distances, neighbour-joining method. Maximum likelihood method, substitution models. Bayesian inference of phylogeny. |