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Course, academic year 2024/2025
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Microbiology I. - DA1104339
Title: Microbiology I.
Guaranteed by: Department of Medical Microbiology (13-323)
Faculty: Second Faculty of Medicine
Actual: from 2024
Semester: summer
Points: 5
E-Credits: 5
Examination process: summer s.:
Hours per week, examination: summer s.:28/42, C [HS]
Extent per academic year: 14 [weeks]
Capacity: unlimited / unlimited (unknown)
Min. number of students: unlimited
4EU+: no
Virtual mobility / capacity: no
Key competences:  
State of the course: taught
Language: English
Teaching methods: full-time
Level:  
Guarantor: prof. MUDr. Pavel Dřevínek, Ph.D.
Teacher(s): prof. MUDr. Pavel Dřevínek, Ph.D.
Classification: Medicine > Basic Sciences
Co-requisite : DA1103040
Pre-requisite : DA1101001, DA1101333, DA1101338, DA1102333, DA1102338
Is co-requisite for: DA1103040
Is pre-requisite for: DA1105439, DA1105038
Annotation
Basic principles of general microbiology, patogenetic mechanisms, special bacteriology, mycology, virology and parasitology, principles of antimicrobial therapy, antiinfectious immunity and specific and nonspecific immunomodulation, clinical microbiology with selection of laboratory techniques, interpretation, differential diagnostics.
Last update: Kovář Jan (01.07.2022)
Course completion requirements

Mandatory participation in practical exercises with one permitted absence. It is possible to replace the practice with another circle twice. Other refunds will not be allowed. If the student does not have enough attendance, the student will be tested by the teacher.

"The passing of test (the test includes 10 points in total; 6 points are the threshold to pass) is a condition for getting the credit. Individual test has to be completed by every student before the start of the lecture (13th week)".

And successfully passing practical exam at the last week of the practicals.

Last update: Laušerová Romana (09.02.2024)
Literature
Murray, P. Medical microbiology : Mosby, 2009 (B), (avaible as ebook)
+Mims, C. A.: Medical microbiology : Mosby, 2013

Last update: Kovář Jan (01.07.2022)
Syllabus

Syllabus - international students practical course

Medical Microbiology - 2nd year - summer semester

1) Laboratory safety rules and equipment. Processing of clinical samples in microbiological analysis.

Medical students will be familiarized with safety rules and with organization of education process at the Department of Medical Microbiology. Information including desinfection and sterilization will be presented and various microscopic will be demonstrated.

2) Collection of clinical samples and transport.

Demonstration of relevant collection procedures of significant clinical samples.

3) Direct detection, part 1 (microscopy).

Morphology of bacterial cell; microscopy preparation and fixation; various staining procedures.

4) Direct detection, part 2 (cultivation, phenotypic identification, serotyping).

The goal of the practical is cultivation of microorganisms using general, enriched and diagnostic culture media. Students are familiarized with fundamental terms as culture media and cultivation conditions. Students practise inoculation on culture media. The practical includes working with isolates, their identification with phenotypic method and reverse agglutination.

5) Susceptibility to antibiotics.

Students determine antibiotic susceptibility of various clinical bacterial isolates by using disc diffusion method. Minimum inhibitory concentration (MIC) using broth microdilution method and E-test will be demonstrated.

6) Indirect serological methods.

The most significant indirect (serological) methods (agglutination, precipitation, Enzyme-Linked ImmunoSorbent Assay - ELISA) are introduced. Serological results of the methods are presented and interpreted using knowledge of basic immunological mechanisms.

7) Molecular biology methods.

Overview of molecular biology methods applicable in medical microbiology laboratory.

8) Staphylococci.

Microbiological diagnosis of staphylococcal infection. Phenotypic identification using screening tests, ie. free and bound coagulase, catalase test.

9) Streptococci.

Differentiation of streptococci using their colony morphology, hemolytic properties and various tests as optochine test, PYR test, CAMP test.

10) Bordetella, Haemophilus, Neisseria.

Demonstration of supplemented enriched media which should be used for cultivation of the fastidious organisms. Instruction for deep nasopharyngeal swab to collect clinical material for detection of Bordetella pertussis or B. parapertussis.

11) Enterobacteriaceae.

Microbiological diagnosis of clinically important strains. Practical approach of reverse agglutination to confirm relevant serotypes.

12) Pseudomonas and Nonfermenters.

Microbiological diagnosis of significant clinical species. Detection of various pigment production and antibiotic resistance of clinical isolates.

13) Listeriae and Corynebacteria.

Cultivation of saprophytic and pathogenic corynebacteria using diagnostic culture media. Detection of strain toxigenity. Temperature dependent cultivation of Listeria monocytogenes.

14) Credits.

Last update: Kovář Jan (01.07.2022)
 
Schedule scheduled
Schedule ticket Date From - To Education type Theme Teacher Files Note
24bDA1104339p1

Groups of students
M2.AVL
Wed 26.02.2025 8:00 - 9:40 lecture Introduction to Medical microbiology, basics of bacterial cell genetics prof. MUDr. Pavel Dřevínek, Ph.D.
Wed 05.03.2025 8:00 - 9:40 lecture Bacterial cell. Pathogenicity of bacteria. Mgr. Jan Tkadlec, Ph.D.
Wed 12.03.2025 8:00 - 9:40 lecture Introduction to antibiotics. Systematics of antimicrobials I. doc. MVDr. Oto Melter, Ph.D.
Wed 19.03.2025 8:00 - 9:40 lecture Molecular microbiology prof. MUDr. Pavel Dřevínek, Ph.D.
Wed 26.03.2025 8:00 - 9:40 lecture Introduction to antibiotics. Systematics of antimicrobials II. doc. MVDr. Oto Melter, Ph.D.
Wed 02.04.2025 8:00 - 9:40 lecture Significant G+ cocci I (staphylococci) - CREDIT TEST I Mgr. Jan Tkadlec, Ph.D.
Wed 09.04.2025 8:00 - 9:40 lecture Significant G+ cocci II (streptococci and enterococci) Mgr. Marcela Krůtová, Ph.D.
Wed 16.04.2025 8:00 - 9:40 lecture Significant G+ rods (corynebacteria, listeria, clostridia) doc. MVDr. Oto Melter, Ph.D.
Wed 23.04.2025 8:00 - 9:40 lecture G- bacteria I (enterobacteria) w/ G+ and G- anaerobes prof. RNDr. Alexandr Nemec, Ph.D., Ph.D.
Wed 30.04.2025 8:00 - 9:40 lecture G-bacteria II (Non-fermenters, Campylobacter, Helicobacter) prof. RNDr. Alexandr Nemec, Ph.D., Ph.D.
Wed 07.05.2025 8:00 - 9:40 lecture G- bacteria III (fastidious: Bordetella, Legionella, Haemophilus, Meningococcus) MUDr. Daniela Lžičařová
Wed 14.05.2025 8:00 - 9:40 lecture NO LECTURE prof. MUDr. Pavel Dřevínek, Ph.D.
Wed 21.05.2025 8:00 - 9:40 lecture Atypical bacteria I (mycobacteria, spirochets) doc. MUDr. Pavel Čermák, CSc.
Wed 28.05.2025 8:00 - 9:40 lecture Atypical bacteria II (Rickettsia, Coxiella, Bartonella, Chlamydia, Mycoplasma) - CREDIT TEST II prof. RNDr. Alexandr Nemec, Ph.D., Ph.D.
24bDA1104339x01

Groups of students
M2.1.AVL
M2.2.AVL
Tue 25.02.2025 8:00 - 10:35 practical classes "Preanalytical phase of microbiological diagnostics
"
doc. MVDr. Oto Melter, Ph.D.
Tue 04.03.2025 8:00 - 10:35 practical classes Microscopy in bacteriology doc. MVDr. Oto Melter, Ph.D.
Tue 11.03.2025 8:00 - 10:35 practical classes Bacterial culture and procedures leading to the identification of bacteria doc. MVDr. Oto Melter, Ph.D.
Tue 18.03.2025 8:00 - 10:35 practical classes Antimicrobials susceptibility testing (AST) prof. MUDr. Pavel Dřevínek, Ph.D.
Tue 25.03.2025 8:00 - 10:35 practical classes Serological methods doc. MVDr. Oto Melter, Ph.D.
Tue 01.04.2025 8:00 - 10:35 practical classes Diagnostics of G+ cocci I (staphylococci) prof. MUDr. Pavel Dřevínek, Ph.D.
Tue 08.04.2025 8:00 - 10:35 practical classes Diagnostics of G+ cocci II (streptococci and enterococci) doc. MVDr. Oto Melter, Ph.D.
Tue 15.04.2025 8:00 - 10:35 practical classes Diagnostic methods in parasitology doc. MVDr. Oto Melter, Ph.D.
Tue 22.04.2025 8:00 - 10:35 practical classes Diagnostics of important G+ rods (corynebacteria, listeria, clostridia and bacilli) doc. MVDr. Oto Melter, Ph.D.
Tue 29.04.2025 8:00 - 10:35 practical classes Diagnostics of G-bacteria I. (enterobacteria) and anaerobes doc. MVDr. Oto Melter, Ph.D.
Tue 06.05.2025 8:00 - 10:35 practical classes Diagnostics of G-bacteria II - nonfermenters, Campylobacter, Helicobacter doc. MVDr. Oto Melter, Ph.D.
Tue 13.05.2025 8:00 - 10:35 practical classes Seminar: Brucella, Francisella. Diagnostics of G-bacteria III - fastidious bacteria (bordetella, Legionella, haemophilus, meningococcus) doc. MVDr. Oto Melter, Ph.D.
Tue 20.05.2025 8:00 - 10:35 practical classes Diagnostic methods in mycology MUDr. Daniela Lžičařová
Tue 27.05.2025 8:00 - 10:35 practical classes PRACTICAL EXAM doc. MVDr. Oto Melter, Ph.D.
24bDA1104339x02

Groups of students
M2.4.AVL
M2.3.AVL
Fri 28.02.2025 8:00 - 10:35 practical classes "Preanalytical phase of microbiological diagnostics
"
MUDr. Sergii Romanov
Fri 07.03.2025 8:00 - 10:35 practical classes Microscopy in bacteriology MUDr. Sergii Romanov
Fri 14.03.2025 8:00 - 10:35 practical classes Bacterial culture and procedures leading to the identification of bacteria MUDr. Sergii Romanov
Fri 21.03.2025 8:00 - 10:35 practical classes Antimicrobials susceptibility testing (AST) MUDr. Sergii Romanov
Fri 28.03.2025 8:00 - 10:35 practical classes Serological methods MUDr. Sergii Romanov
Fri 04.04.2025 8:00 - 10:35 practical classes Diagnostics of G+ cocci I (staphylococci) MUDr. Sergii Romanov
Fri 11.04.2025 8:00 - 10:35 practical classes Diagnostics of G+ cocci II (streptococci and enterococci) doc. MVDr. Oto Melter, Ph.D.
Fri 18.04.2025 8:00 - 10:35 practical classes Diagnostic methods in parasitology MUDr. Sergii Romanov
Fri 25.04.2025 8:00 - 10:35 practical classes Diagnostics of important G+ rods (corynebacteria, listeria, clostridia and bacilli) MUDr. Sergii Romanov
Fri 02.05.2025 8:00 - 10:35 practical classes Diagnostics of G-bacteria I. (enterobacteria) and anaerobes MUDr. Sergii Romanov
Fri 09.05.2025 8:00 - 10:35 practical classes Diagnostics of G-bacteria II - nonfermenters, Campylobacter, Helicobacter MUDr. Sergii Romanov
Fri 16.05.2025 8:00 - 10:35 practical classes Seminar: Brucella, Francisella. Diagnostics of G-bacteria III - fastidious bacteria (bordetella, Legionella, haemophilus, meningococcus) MUDr. Sergii Romanov
Fri 23.05.2025 8:00 - 10:35 practical classes Diagnostic methods in mycology MUDr. Daniela Lžičařová
Fri 30.05.2025 8:00 - 10:35 practical classes PRACTICAL EXAM MUDr. Sergii Romanov
 
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